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authorChris Sobczak <chris@sobczak.family>2026-09-16 12:04:31 -0700
committerChris Sobczak <chris@sobczak.family>2026-09-16 12:04:31 -0700
commitfec305ce61009f7c51ac9c6965932f2e98201bc2 (patch)
tree91d129c70579c7a31c8201ace6b3451133a29f7c
parent6a9f2c5b54ece9100184e79aa097b5922e6de8c8 (diff)
Add slides
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+---
+title: "TITLE"
+author: "AUTHOR"
+date: "`r format(Sys.time(), '%B %d %Y')`"
+output:
+ bookdown::beamer_presentation2:
+ toc: true
+ number_sections: true
+ fig_caption: yes
+ highlight: "zenburn"
+ slide_level: 2
+ theme: "default"
+ colortheme: "default"
+ extra_dependencies: ['float','multicol']
+bibliography: references.bib
+link-citations: true
+colorlinks: true
+linkcolor: purple
+urlcolor: blue
+citecolor: red
+header-includes:
+ - \usepackage{etoolbox}
+ - \usepackage[toc,acronym,automake]{glossaries}
+ - \makeglossaries
+editor_options:
+ markdown:
+ wrap: 72
+---
+
+```{r setup, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE, root.dir = 'render-files')
+```
+
+<!-- If you have a number of topics, subdivide them in sections and organize papers under them -->
+# Topic one
+
+<!-- to allow contents to span pages use {.allowframebreaks} -->
+## Paper one [@Shin_2014] {.allowframebreaks}
+
+\newglossaryentry{mr}{
+ name={Mendelian randomization},
+ description={Using genetic variants as instruments to infer causal effects}
+}
+
+\newacronym{gdm}{GDM}{Genetically Determined Metabotype}
+
+Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary.
+
+## Short title of paper [@Suhre_2011]
+
+# Topic two
+
+\newpage
+
+<!-- Add youtube channels and databse links here -->
+# Online resources
+- [Human Metabolome Database](https://www.hmdb.ca/)
+
+<!-- For listing and defining new vocabulary, done automatically -->
+# Glossary
+\printglossaries
+
+# References