slides.rmd


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63

---
title: "TITLE"
author: "AUTHOR"
date: "`r format(Sys.time(), '%B %d %Y')`"
output:
  bookdown::beamer_presentation2:
    toc: true
    number_sections: true
    fig_caption: yes
    highlight: "zenburn"
    slide_level: 2
    theme: "default"
    colortheme: "default"
    extra_dependencies: ['float','multicol']
bibliography: references.bib
link-citations: true
colorlinks: true
linkcolor: purple
urlcolor: blue
citecolor: red
header-includes:
  - \usepackage{etoolbox}
  - \usepackage[toc,acronym,automake]{glossaries}
  - \makeglossaries
editor_options:
  markdown:
    wrap: 72
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE, root.dir = 'render-files')
```

<!-- If you have a number of topics, subdivide them in sections and organize papers under them -->
# Topic one

<!-- to allow contents to span pages use {.allowframebreaks} -->
## Paper one [@Shin_2014] {.allowframebreaks}

\newglossaryentry{mr}{
	name={Mendelian randomization},
	description={Using genetic variants as instruments to infer causal effects}
}

\newacronym{gdm}{GDM}{Genetically Determined Metabotype}

Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary.

## Short title of paper [@Suhre_2011]

# Topic two

\newpage

<!-- Add youtube channels and databse links here -->
# Online resources
- [Human Metabolome Database](https://www.hmdb.ca/)

<!-- For listing and defining new vocabulary, done automatically -->
# Glossary
\printglossaries

# References