1 files changed, 0 insertions, 142 deletions
diff --git a/R/corplot.R b/R/corplot.R
deleted file mode 100644
index e849a92..0000000
--- a/R/corplot.R
+++ /dev/null
@@ -1,142 +0,0 @@
-#' Correlation Plot (Upper Triangle)
-#'
-#' Minimal ggplot2 correlation plot showing the upper triangle
-#' in the top-right corner with no axis labels.
-#' @param R A square numeric correlation matrix
-#' @param title Optional plot title
-#'
-#' @return A ggplot object
-#'
-#' @examples
-#' X <- matrix(data = rnorm(100), nrow = 10)
-#' R <- cor(X)
-#' corplot(R, title = 'Example Correlation Plot')
-#'
-#' @importFrom reshape2 melt
-#' @import ggplot2
-#' @export
-corplot <- function(R, title = NULL){
-	R_list <- tryCatch({
-		if(is.matrix(R)){
-			cnames <- colnames(R)
-			rnames <- rownames(R)
-			if(nrow(R) == ncol(R)){
-				list(
-					R = R[upper.tri(R)],
-					cnames = cnames,
-					rnames = rnames,
-					p = ncol(R)
-				)
-			}
-		}else if(is.vector(R)){
-			m <- length(R)
-			n <- (1 + sqrt(1 + 8 * m)) / 2
-			if(n == floor(n)){
-				list(
-					R = R,
-					cnames = NULL,
-					rnames = NULL,
-					p = n
-				)
-			}else{
-				stop('Input length not compatible with upper triangle')
-			}
-		}else{
-			Rm <- as.matrix(R)
-			cnames <- colnames(Rm)
-			rnames <- rownames(Rm)
-			if(nrow(Rm) == ncol(Rm)){
-				list(
-					R = Rm[upper.tri(Rm)],
-					cnames = cnames,
-					rnames = rnames,
-					p = ncol(Rm)
-				)
-			}
-		}
-	}, error = function(e){
-		stop(paste('Invalid input for corplot:', e$message))
-	})
-
-	if(is.null(R_list$cnames)){
-		R_list$cnames <- as.character(seq_len(R_list$p))
-	}
-	if(is.null(R_list$rnames)){
-		R_list$rnames <- as.character(seq_len(R_list$p))
-	}
-
-	# Now get a df from the upper triangle
-	m <- length(R_list$R)
-	n <- as.integer((1 + sqrt(1 + 8 * m)) / 2)
-	M <- matrix(NA, n, n)
-	M[upper.tri(M)] <- R_list$R
-	colnames(M) <- R_list$cnames
-	rownames(M) <- R_list$rnames
-	df <- reshape2::melt(M, na.rm = TRUE)
-	colnames(df) <- c('i', 'j', 'value')
-
-	col_label_df <- data.frame(
-		j = seq_len(n)[-1],
-		i = 0,
-		label = R_list$cnames[-1]
-	)
-	row_label_df <- data.frame(
-		j = seq_len(n)[-n],
-		i = seq_len(n)[-n],
-		label = R_list$cnames[-n]
-	)
-
-	max_nchar <- max(nchar(R_list$cnames))
-	top_margin <- 5 + max_nchar * 2
-
-	# And plot it
-	p <- ggplot2::ggplot(
-		data = df,
-		ggplot2::aes(x = .data$j, y = .data$i, fill = .data$value)
-	) +
-	ggplot2::geom_tile() +
-	ggplot2::geom_text(
-		data = col_label_df,
-		ggplot2::aes(x = .data$j, y = .data$i, label = .data$label),
-		inherit.aes = FALSE,
-		angle = 90,
-		hjust = 0,
-		vjust = 0.5
-	) +
-	ggplot2::geom_text(
-		data = row_label_df,
-		ggplot2::aes(x = .data$j, y = .data$i, label = .data$label),
-		inherit.aes = FALSE,
-		hjust = 1,
-		vjust = 0.5
-	) +
-	ggplot2::scale_fill_gradient2(
-		low = 'red',
-		mid = 'white',
-		high = 'blue',
-		midpoint = 0,
-		limits = c(-1, 1),
-		name = NULL,
-		guide = 'none'
-	) +
-	ggplot2::scale_y_reverse() +
-	ggplot2::coord_fixed(clip = 'off') +
-	ggplot2::theme_void() +
-	ggplot2::theme(
-		plot.margin = ggplot2::margin(
-			t = top_margin,
-			r = 5,
-			b = 5,
-			l = 5
-		)
-	)
-
-	if(!is.null(title)){
-		p <- p +
-		ggplot2::ggtitle(title) +
-		ggplot2::theme(
-			plot.title = ggplot2::element_text(hjust = 0.5)
-		)
-	}
-	return(p)
-}