rmad <- function(x, y = NULL, na.rm = FALSE, even.correction = FALSE, num.threads = "half-max") { ## check input data dat <- .check_input_data_matrix(x = x, y = y, na.rm = na.rm) colnames_original <- colnames(dat) storage.mode(dat) <- "double" n <- as.integer(nrow(dat)) p <- as.integer(ncol(dat)) ## set even correction if (even.correction) { evencorrection <- 1L } else { evencorrection <- 0L } ## set number of threads if (num.threads == "half-max") { num.threads <- 0L } else if (num.threads == 0) { num.threads <- 1L } else { storage.mode(num.threads) <- "integer" } ## Call C code u <- .Call(C_cormad_C, dat, n, p, evencorrection, num.threads) if (!is.null(y)) { ## 2-dimensional return(u) } else { ## p-dimensional ## assemble the matrix using the lower triangle R <- Matrix(1, nrow = p, ncol = p, sparse = FALSE) R[lower.tri(R, diag = FALSE)] <- u R <- forceSymmetric(R, uplo = "L") R <- as(R, "dspMatrix") ## attach dimnames if needed if (!is.null(colnames_original)) { dimnames(R)[[1]] <- dimnames(R)[[2]] <- colnames_original } return(R) } ## END if(!is.null(y)){ ## 2-dimensional } ## END function