--- title: "TITLE" author: "AUTHOR" date: "`r format(Sys.time(), '%B %d %Y')`" output: bookdown::pdf_document2: toc: false number_sections: true fig_caption: yes highlight: "zenburn" extra_dependencies: ['float','multicol'] bibliography: references.bib link-citations: true colorlinks: true linkcolor: purple urlcolor: blue citecolor: red header-includes: - \usepackage{etoolbox} - \usepackage[colorlinks=true,linkcolor=purple]{hyperref} - \usepackage[toc,acronym,automake]{glossaries} - \makeglossaries editor_options: markdown: wrap: 72 --- \tableofcontents \newpage # Topic one ## Paper one [@Shin_2014] \newglossaryentry{mr}{ name={Mendelian randomization}, description={Using genetic variants as instruments to infer causal effects} } \newacronym{gdm}{GDM}{Genetically Determined Metabotype} Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary. ## Short title of paper [@Suhre_2011] # Topic two \newpage # Online resources - [Human Metabolome Database](https://www.hmdb.ca/) \newpage \printglossaries \newpage # References