--- project: output-dir: render-files title: "TITLE" author: "AUTHOR" date: now date-format: "MMMM DD YYYY" format: pdf: toc: false number-sections: true fig-caption: yes highlight-style: "zenburn" include-in-header: - text: | \usepackage{etoolbox} \usepackage[colorlinks=true,linkcolor=purple]{hyperref} \usepackage[toc,acronym,automake]{glossaries} \makeglossaries extra-dependencies: - float - multicol bibliography: references.bib link-citations: true colorlinks: true linkcolor: purple urlcolor: blue citecolor: red editor-options: markdown: wrap: 72 --- \tableofcontents \newpage # Topic one ## Paper one [@Shin_2014] \newglossaryentry{mr}{ name={Mendelian randomization}, description={Using genetic variants as instruments to infer causal effects} } \newacronym{gdm}{GDM}{Genetically Determined Metabotype} Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary. ## Short title of paper [@Suhre_2011] # Topic two \newpage # Online resources - [Human Metabolome Database](https://www.hmdb.ca/) \newpage \printglossaries \newpage # References