From fec305ce61009f7c51ac9c6965932f2e98201bc2 Mon Sep 17 00:00:00 2001
From: Chris Sobczak <chris@sobczak.family>
Date: Wed, 16 Sep 2026 12:04:31 -0700
Subject: Add slides

---
 slides.rmd | 63 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 63 insertions(+)
 create mode 100644 slides.rmd

(limited to 'slides.rmd')

diff --git a/slides.rmd b/slides.rmd
new file mode 100644
index 0000000..b64f831
--- /dev/null
+++ b/slides.rmd
@@ -0,0 +1,63 @@
+---
+title: "TITLE"
+author: "AUTHOR"
+date: "`r format(Sys.time(), '%B %d %Y')`"
+output:
+  bookdown::beamer_presentation2:
+    toc: true
+    number_sections: true
+    fig_caption: yes
+    highlight: "zenburn"
+    slide_level: 2
+    theme: "default"
+    colortheme: "default"
+    extra_dependencies: ['float','multicol']
+bibliography: references.bib
+link-citations: true
+colorlinks: true
+linkcolor: purple
+urlcolor: blue
+citecolor: red
+header-includes:
+  - \usepackage{etoolbox}
+  - \usepackage[toc,acronym,automake]{glossaries}
+  - \makeglossaries
+editor_options:
+  markdown:
+    wrap: 72
+---
+
+```{r setup, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE, root.dir = 'render-files')
+```
+
+<!-- If you have a number of topics, subdivide them in sections and organize papers under them -->
+# Topic one
+
+<!-- to allow contents to span pages use {.allowframebreaks} -->
+## Paper one [@Shin_2014] {.allowframebreaks}
+
+\newglossaryentry{mr}{
+	name={Mendelian randomization},
+	description={Using genetic variants as instruments to infer causal effects}
+}
+
+\newacronym{gdm}{GDM}{Genetically Determined Metabotype}
+
+Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary.
+
+## Short title of paper [@Suhre_2011]
+
+# Topic two
+
+\newpage
+
+<!-- Add youtube channels and databse links here -->
+# Online resources
+- [Human Metabolome Database](https://www.hmdb.ca/)
+
+<!-- For listing and defining new vocabulary, done automatically -->
+# Glossary
+\printglossaries
+
+# References
-- 
cgit v1.2.3