diff options
| -rw-r--r-- | lit-review-template.rmd | 32 |
1 files changed, 24 insertions, 8 deletions
diff --git a/lit-review-template.rmd b/lit-review-template.rmd index 3ad65f3..3863591 100644 --- a/lit-review-template.rmd +++ b/lit-review-template.rmd @@ -1,9 +1,9 @@ --- -title: "TEMPLATE_FIELD" -author: "TEMPLATE_FIELD" -date: "`r format(Sys.time(), '%d %B %Y - %H:%M')`" +title: "TITLE" +author: "AUTHOR" +date: "`r format(Sys.time(), '%B %d %Y')`" output: - pdf_document: + bookdown::pdf_document2: toc: false number_sections: true fig_caption: yes @@ -11,9 +11,15 @@ output: extra_dependencies: ['float','multicol'] bibliography: references.bib link-citations: true +colorlinks: true +linkcolor: purple +urlcolor: blue +citecolor: red header-includes: - \usepackage{etoolbox} - - \AtEndPreamble{\hypersetup{colorlinks=true,linkcolor=blue,urlcolor=blue,citecolor=red}} + - \usepackage[colorlinks=true,linkcolor=purple]{hyperref} + - \usepackage[toc,acronym,automake]{glossaries} + - \makeglossaries editor_options: markdown: wrap: 72 @@ -27,7 +33,16 @@ editor_options: ## Paper one [@Shin_2014] -## Paper two [@Suhre_2011] +\newglossaryentry{mr}{ + name={Mendelian randomization}, + description={Using genetic variants as instruments to infer causal effects} +} + +\newacronym{gdm}{GDM}{Genetically Determined Metabotype} + +Here is an example of learning new vocabilary such as \gls{mr} and defining it in the glossary. + +## Short title of paper [@Suhre_2011] # Topic two @@ -35,11 +50,12 @@ editor_options: <!-- Add youtube channels and databse links here --> # Online resources +- [Human Metabolome Database](https://www.hmdb.ca/) \newpage -<!-- For listing and defining new vocabulary --> -# Glossary +<!-- For listing and defining new vocabulary, done automatically --> +\printglossaries \newpage |